VSN-Pipelines-examples
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Single-sample workflows
10k PBMCs (10x Genomics)
10k PBMCs with multiple SCENIC iterations
Sample aggregation workflows
Hung, R.-J. et al., 2019 - A cell atlas of the adult Drosophila midgut
Davie, K., Janssens, J., Koldere, D. et al., 2018 - A Single-Cell Transcriptome Atlas of the Aging Drosophila Brain.
Bageritz, J., Willnow, P., Valentini, E. et al., 2019 - Gene expression atlas of a developing tissue by single cell expression correlation analysis.
Kurmangaliyev et al., 2019 - Modular transcriptional programs separately define axon and dendrite connectivity
Guo, X. et al., 2019 - The Cellular Diversity and Transcription Factor Code of Drosophila Enteroendocrine Cells.
Ji, T., et al., 2019 - Dynamic MAPK signaling activity underlies a transition from growth arrest to proliferation in Drosophila scribble mutant tumors.
Brunet Avalos, C. et al., 2019 - Single cell transcriptome atlas of the Drosophila larval brain
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